TAP HMG in Panicum virgatum

Full lineage¹: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum; Panicum sect. Hiantes

Protein source: Phytozome (proteins from primary transcripts)


The colour code corresponds to the rules for the domains:

should be contained
should not be contained

Domain rules

HMG_box
ARID
YABBY

(Domain names are clickable)



List of proteins (19)

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namename additionClick button to show/hide sequence: Download sequence?
Pavir.Ab01026.1.ppacid=30232764 transcript=Pavir.Ab01026.1 locus=Pavir.Ab01026 ID=Pavir.Ab01026.1.v1.1 annot-version=v1.1
Pavir.Ba01379.1.ppacid=30293316 transcript=Pavir.Ba01379.1 locus=Pavir.Ba01379 ID=Pavir.Ba01379.1.v1.1 annot-version=v1.1
Pavir.Bb02550.1.ppacid=30300381 transcript=Pavir.Bb02550.1 locus=Pavir.Bb02550 ID=Pavir.Bb02550.1.v1.1 annot-version=v1.1
Pavir.Ca01033.1.ppacid=30206842 transcript=Pavir.Ca01033.1 locus=Pavir.Ca01033 ID=Pavir.Ca01033.1.v1.1 annot-version=v1.1
Pavir.Db00040.1.ppacid=30262148 transcript=Pavir.Db00040.1 locus=Pavir.Db00040 ID=Pavir.Db00040.1.v1.1 annot-version=v1.1
Pavir.Ea00282.1.ppacid=30227972 transcript=Pavir.Ea00282.1 locus=Pavir.Ea00282 ID=Pavir.Ea00282.1.v1.1 annot-version=v1.1
Pavir.Eb02691.1.ppacid=30310671 transcript=Pavir.Eb02691.1 locus=Pavir.Eb02691 ID=Pavir.Eb02691.1.v1.1 annot-version=v1.1
Pavir.Fb00026.1.ppacid=30280603 transcript=Pavir.Fb00026.1 locus=Pavir.Fb00026 ID=Pavir.Fb00026.1.v1.1 annot-version=v1.1
Pavir.Ga01019.1.ppacid=30303203 transcript=Pavir.Ga01019.1 locus=Pavir.Ga01019 ID=Pavir.Ga01019.1.v1.1 annot-version=v1.1
Pavir.Gb00881.1.ppacid=30223986 transcript=Pavir.Gb00881.1 locus=Pavir.Gb00881 ID=Pavir.Gb00881.1.v1.1 annot-version=v1.1
Pavir.J04920.1.ppacid=30282421 transcript=Pavir.J04920.1 locus=Pavir.J04920 ID=Pavir.J04920.1.v1.1 annot-version=v1.1
Pavir.J05892.1.ppacid=30287313 transcript=Pavir.J05892.1 locus=Pavir.J05892 ID=Pavir.J05892.1.v1.1 annot-version=v1.1
Pavir.J07596.1.ppacid=30295527 transcript=Pavir.J07596.1 locus=Pavir.J07596 ID=Pavir.J07596.1.v1.1 annot-version=v1.1
Pavir.J08546.1.ppacid=30218589 transcript=Pavir.J08546.1 locus=Pavir.J08546 ID=Pavir.J08546.1.v1.1 annot-version=v1.1
Pavir.J10680.1.ppacid=30282064 transcript=Pavir.J10680.1 locus=Pavir.J10680 ID=Pavir.J10680.1.v1.1 annot-version=v1.1
Pavir.J10741.1.ppacid=30199724 transcript=Pavir.J10741.1 locus=Pavir.J10741 ID=Pavir.J10741.1.v1.1 annot-version=v1.1
Pavir.J20558.1.ppacid=30197027 transcript=Pavir.J20558.1 locus=Pavir.J20558 ID=Pavir.J20558.1.v1.1 annot-version=v1.1
Pavir.J38684.1.ppacid=30270862 transcript=Pavir.J38684.1 locus=Pavir.J38684 ID=Pavir.J38684.1.v1.1 annot-version=v1.1
Pavir.J40489.1.ppacid=30296409 transcript=Pavir.J40489.1 locus=Pavir.J40489 ID=Pavir.J40489.1.v1.1 annot-version=v1.1
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A list of species letter codes included in the protein names can be found here (opens in new tab).

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¹ Information recieved using NCBI E-utilities and NCBI taxonomy database.
Impressum